Protein Data Bank in Europe

Chain: A
Length: 880 amino acids
Theoretical weight: 99.77 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB53 (Residues: 1-880; Coverage: 100%)

Gene names: J5U23_00031, rpo1N, rpoA1
Sequence domains:

• RNA polymerase Rpb1, domain 1
• RNA polymerase Rpb1, domain 2
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5

Structure domains:

• Barwin-like endoglucanases
• RNA polymerase ii
• Arc Repressor Mutant, subunit A
• Dihydrolipoamide Transferase
• Immunoglobulin-like
• Topoisomerase I; Chain A, domain 4
• Single alpha-helices involved in coiled-coils or other helix-helix interfaces
• N-terminal domain of TfIIb

Chain: B
Length: 1131 amino acids
Theoretical weight: 127.58 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB55 (Residues: 1-1128; Coverage: 100%)

Gene names: J5U23_00030, rpo2
Sequence domains:

• RNA polymerase beta subunit
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• RNA polymerase Rpb2, domain 5
• RNA polymerase Rpb2, domain 6
• RNA polymerase Rpb2, domain 7

Structure domains:

• RNA polymerase Rpb2, domain 2
• Hypothetical Protein Ta0175; Chain: A, domain 2
• DNA-directed RNA polymerase, subunit 2, domain 6
• OB fold (Dihydrolipoamide Acetyltransferase, E2P)
• RNA polymerase alpha subunit dimerisation domain

Chain: C
Length: 395 amino acids
Theoretical weight: 43.79 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB54 (Residues: 1-392; Coverage: 100%)

Gene names: J5U23_00032, rpo1C, rpoA2
Sequence domains: RNA polymerase Rpb1, domain 5
Structure domains: DNA polymerase; domain 1

Chain: D
Length: 265 amino acids
Theoretical weight: 30.18 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB56 (Residues: 1-265; Coverage: 100%)

Gene names: J5U23_00176, rpo3, rpoD
Sequence domains:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/RpoA insert domain

Structure domains:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase, insert domain
• Alpha-Beta Plaits

Chain: E
Length: 180 amino acids
Theoretical weight: 20.33 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB57 (Residues: 1-180; Coverage: 100%)

Gene names: J5U23_03022, rpo7, rpoE
Sequence domains:

• SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
• S1 RNA binding domain

Structure domains:

• RNA polymerase Rpb7-like, N-terminal domain
• Nucleic acid-binding proteins

Chain: F
Length: 113 amino acids
Theoretical weight: 12.82 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB58 (Residues: 1-113; Coverage: 100%)

Gene names: J5U23_02661, rpo4, rpoF
Sequence domains: RNA polymerase Rpb4
Structure domains:

• Helix Hairpins
• HRDC domain

Chain: G
Length: 132 amino acids
Theoretical weight: 15.14 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB59 (Residues: 1-131; Coverage: 100%)

Gene names: J5U23_03191, rpo8, rpoG
Sequence domains: DNA-directed RNA polymerase, subunit G
Structure domains: Nucleic acid-binding proteins

Chain: H
Length: 84 amino acids
Theoretical weight: 9.69 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB60 (Residues: 1-84; Coverage: 100%)

Gene names: J5U23_00029, rpo5, rpoH
Sequence domains: RNA polymerase Rpb5, C-terminal domain
Structure domains: RPB5-like RNA polymerase subunit

Chain: K
Length: 95 amino acids
Theoretical weight: 10.73 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB61 (Residues: 1-95; Coverage: 100%)

Gene names: J5U23_02568, rpo6, rpoK
Sequence domains: RNA polymerase Rpb6
Structure domains: Eukaryotic RPB6 RNA polymerase subunit

Chain: L
Length: 92 amino acids
Theoretical weight: 10.21 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB62 (Residues: 1-92; Coverage: 100%)

Gene names: J5U23_03144, rpo11, rpoL
Sequence domains:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/Rpb11 dimerisation domain

Structure domains: RNA polymerase, RBP11-like subunit

Chain: N
Length: 66 amino acids
Theoretical weight: 7.62 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB63 (Residues: 1-66; Coverage: 100%)

Gene names: J5U23_00180, rpo10, rpoN
Sequence domains: RNA polymerases N / 8 kDa subunit
Structure domains: Homeodomain-like

Chain: P
Length: 48 amino acids
Theoretical weight: 5.61 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB64 (Residues: 1-48; Coverage: 100%)

Gene names: J5U23_02993, rpo12, rpoP
Structure domains: RNA polymerase ii, chain L

Chain: Q
Length: 104 amino acids
Theoretical weight: 12.17 KDa
Source organism: Saccharolobus shibatae
UniProt:

• Canonical: B8YB65 (Residues: 1-104; Coverage: 100%)

Gene names: J5U23_03039, rpo13
Sequence domains: RNA polymerase Rpo13 subunit HTH domain
Structure domains: DNA Excision Repair, Uvrb; Chain A