4cex

X-ray diffraction
1.59Å resolution

1.59 A resolution Fluoride inhibited Sporosarcina pasteurii urease

Released:
Source organism: Sporosarcina pasteurii
Primary publication:
Fluoride inhibition of Sporosarcina pasteurii urease: structure and thermodynamics.
J Biol Inorg Chem 19 1243-61 (2014)
PMID: 25113581

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-154232 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Urease subunit gamma Chain: A
Molecule details ›
Chain: A
Length: 100 amino acids
Theoretical weight: 11.2 KDa
Source organism: Sporosarcina pasteurii
UniProt:
  • Canonical: P41022 (Residues: 1-100; Coverage: 100%)
Gene name: ureA
Sequence domains: Urease, gamma subunit
Structure domains: Urease, gamma-like subunit
Urease subunit beta Chain: B
Molecule details ›
Chain: B
Length: 126 amino acids
Theoretical weight: 13.98 KDa
Source organism: Sporosarcina pasteurii
UniProt:
  • Canonical: P41021 (Residues: 1-126; Coverage: 100%)
Gene name: ureB
Sequence domains: Urease beta subunit
Structure domains: Urease, beta subunit
Urease subunit alpha Chain: C
Molecule details ›
Chain: C
Length: 570 amino acids
Theoretical weight: 61.65 KDa
Source organism: Sporosarcina pasteurii
UniProt:
  • Canonical: P41020 (Residues: 1-28, 30-37, 38-570; Coverage: 100%)
Gene names: NCTC4822_02163, ureC
Sequence domains:
Structure domains:

Ligands and Environments

2 modified residues:

Experiments and Validation Details

Entry percentile scores
X-ray source: PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Spacegroup: P6322
Unit cell:
a: 131.331Å b: 131.331Å c: 188.882Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.131 0.13 0.15