4dcb

X-ray diffraction
2.03Å resolution

Y. pestis Plasminogen Activator Pla in Complex with Human Plasminogen Activation Loop Peptide ALP11

Released:

Function and Biology Details

Reactions catalysed:
Converts human Glu-plasminogen to plasmin by cleaving the 560-Arg-|-Val-561 peptide bond that is also hydrolyzed by the mammalian u-plasminogen activator and t-plasminogen activator. Also cleaves arginyl bonds in other proteins.
Preferential cleavage: Lys-|-Xaa > Arg-|-Xaa, higher selectivity than trypsin. Converts fibrin into soluble products.
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-133232 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Plasminogen activator Chain: A
Molecule details ›
Chain: A
Length: 297 amino acids
Theoretical weight: 33.28 KDa
Source organism: Yersinia pestis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P17811 (Residues: 25-312; Coverage: 99%)
Gene names: YPPCP1.07, YP_pPCP08, pla
Sequence domains: Omptin family
Structure domains: OMPT-like
Plasmin light chain B Chain: F
Molecule details ›
Chain: F
Length: 11 amino acids
Theoretical weight: 1.11 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P00747 (Residues: 576-585; Coverage: 1%)
Gene name: PLG

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X6A
Spacegroup: I222
Unit cell:
a: 52.377Å b: 63.105Å c: 201.225Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.18 0.232
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided