4gjt

X-ray diffraction
3.1Å resolution

complex structure of nectin-4 bound to MV-H

Released:

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero tetramer (preferred)
monomeric
PDBe Complex ID:
PDB-CPX-181225 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Hemagglutinin glycoprotein Chain: A
Molecule details ›
Chain: A
Length: 473 amino acids
Theoretical weight: 52.52 KDa
Source organism: Measles virus strain Ichinose-B95a
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q786F2 (Residues: 156-617; Coverage: 75%)
Gene name: H
Sequence domains: Haemagglutinin-neuraminidase
Structure domains: Neuraminidase
Processed poliovirus receptor-related protein 4 Chains: B, C
Molecule details ›
Chains: B, C
Length: 123 amino acids
Theoretical weight: 13.57 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96NY8 (Residues: 32-146; Coverage: 24%)
Gene names: LNIR, NECTIN4, PRR4, PVRL4
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: C2221
Unit cell:
a: 82.35Å b: 171.778Å c: 117.44Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.261 0.26 0.278
Expression systems:
  • Trichoplusia ni
  • Escherichia coli