› 4not

X-ray diffraction
2.35Å resolution

Crystal structure of Dioclea sclerocarpa lectin complexed with X-man

Released:
DOI: 10.2210/pdb4not/pdb
PDB entry 4not coloured by chain, front view.
PDB entry 4not coloured by chain, side view.
PDB entry 4not coloured by chain, top view.
Source organism: Macropsychanthus sclerocarpus
Entry authors: Barroso-Neto IL, Teixeira CS, Correia JLA, Santiago MQ, Pinto-Junior VR, Osterne VJS, Plinio D, Rocha BAM, Cavada BS

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109823 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lectin alpha chain Chain: A
Molecule details ›
Chain: A
Length: 237 amino acids
Theoretical weight: 25.63 KDa
Source organism: Macropsychanthus sclerocarpus
UniProt:
  • Canonical: B3EWJ2 (Residues: 1-237; Coverage: 100%)
Sequence domains: Legume lectin domain
Structure domains: Jelly Rolls

Ligands and Environments

3 bound ligands:
Ligand MN 1 x MN
Ligand CA 1 x CA
Ligand XMM 1 x XMM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: LNLS BEAMLINE W01B-MX2
Spacegroup: I222
Unit cell:
a: 64.94Å b: 66.61Å c: 108.65Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.209 0.256

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