› 4q29

X-ray diffraction
1.35Å resolution

Ensemble Refinement of plu4264 protein from Photorhabdus luminescens

Released:
DOI: 10.2210/pdb4q29/pdb
PDB entry 4q29 coloured by chain, ensemble of 20 models, front view.
PDB entry 4q29 coloured by chain, ensemble of 20 models, side view.
PDB entry 4q29 coloured by chain, ensemble of 20 models, top view.
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Primary publication:
Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution.
Weerth RS, Michalska K, Bingman CA, Yennamalli RM, Li H, Jedrzejczak R, Wang F, Babnigg G, Joachimiak A, Thomas MG, Phillips GN
Proteins 83 383-8 (2015)
PMID: 25354690

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181788 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cupin type-2 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 128 amino acids
Theoretical weight: 15.57 KDa
Source organism: Photorhabdus laumondii subsp. laumondii TTO1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7MZL9 (Residues: 1-122; Coverage: 100%)
Gene name: plu4264
Sequence domains: Cupin domain
Structure domains: Jelly Rolls

Ligands and Environments

2 bound ligands:
Ligand NI 2 x NI
Ligand NA 1 x NA
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: C2221
Unit cell:
a: 55.738Å b: 147.687Å c: 83.843Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.127 0.126 0.155
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Identifying and Visualizing Macromolecular Flexibility in Structural Biology.
Palamini et al. (2016)
1 more

1 mention without citation

Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution.
Weerth et al. (2015)