› 4ulv

X-ray diffraction
1.29Å resolution

Cytochrome c prime from Shewanella frigidimarina

Released:
DOI: 10.2210/pdb4ulv/pdb
PDB entry 4ulv coloured by chain, front view.
PDB entry 4ulv coloured by chain, side view.
PDB entry 4ulv coloured by chain, top view.
Source organism: Shewanella frigidimarina
Primary publication:
Conformational control of the binding of diatomic gases to cytochrome c'.
Manole A, Kekilli D, Svistunenko DA, Wilson MT, Dobbin PS, Hough MA
J Biol Inorg Chem 20 675-86 (2015)
PMID: 25792378

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170585 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c, class II Chains: A, B
Molecule details ›
Chains: A, B
Length: 128 amino acids
Theoretical weight: 13.76 KDa
Source organism: Shewanella frigidimarina
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q07Z15 (Residues: 22-149; Coverage: 99%)
Gene name: Sfri_2910
Sequence domains: Cytochrome C'
Structure domains: Cytochrome c/b562

Ligands and Environments

3 bound ligands:
Ligand HEC 2 x HEC
Ligand GOL 3 x GOL
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P212121
Unit cell:
a: 55.409Å b: 58.323Å c: 76.122Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.153 0.151 0.186
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 review citation

Iron transitions during activation of allosteric heme proteins in cell signaling.
Négrerie M. (2019)
6 other articles