4x4t

X-ray diffraction
2.5Å resolution

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACCA

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-127985 (preferred)
Entry contents:
1 distinct polypeptide molecule
4 distinct RNA molecules
Macromolecules (5 distinct):
CCA-adding enzyme Chains: A, C, E, F
Molecule details ›
Chains: A, C, E, F
Length: 457 amino acids
Theoretical weight: 53.67 KDa
Source organism: Archaeoglobus fulgidus DSM 4304
Expression system: Escherichia coli
UniProt:
  • Canonical: O28126 (Residues: 1-437; Coverage: 100%)
Gene names: AF_2156, cca
Sequence domains:
Structure domains:
G70A tRNA minihelix ending in CCACCA Chains: B, D
Molecule details ›
Chains: B, D
Length: 34 nucleotides
Theoretical weight: 11.15 KDa
Source organism: Homo sapiens
Expression system: Not provided
G70A tRNA minihelix ending in CCACCA Chain: G
Molecule details ›
Chain: G
Length: 31 nucleotides
Theoretical weight: 10.19 KDa
Source organism: Homo sapiens
Expression system: Not provided
RNA (5'-D(P*CP*G)-3') Chain: H
Molecule details ›
Chain: H
Length: 2 nucleotides
Theoretical weight: 605 Da
Source organism: Homo sapiens
Expression system: Not provided
RNA (5'-D(P*GP*G)-3') Chain: I
Molecule details ›
Chain: I
Length: 2 nucleotides
Theoretical weight: 645 Da
Source organism: Homo sapiens
Expression system: Not provided

Ligands and Environments

2 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: P21
Unit cell:
a: 115.422Å b: 83.959Å c: 135.32Å
α: 90° β: 103.51° γ: 90°
R-values:
R R work R free
0.188 0.186 0.229
Expression systems:
  • Escherichia coli
  • Not provided