› 5a2p

X-ray diffraction
2.5Å resolution

THE COMPLEX STRUCTURE OF PDZ DOMAINS IN SYNTENIN-1 WITH 4L PEPTIDE

Released:
DOI: 10.2210/pdb5a2p/pdb
PDB entry 5a2p coloured by chain, front view.
PDB entry 5a2p coloured by chain, side view.
PDB entry 5a2p coloured by chain, top view.
Source organism: Rattus norvegicus
Entry authors: Yoo JH, Yun JH, Cho HS, Lee W

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152743 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Syntenin-1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 163 amino acids
Theoretical weight: 17.61 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9JI92 (Residues: 112-274; Coverage: 54%)
Gene name: Sdcbp
Sequence domains: PDZ domain
Structure domains: Pdz3 Domain
Syndecan-4 Chains: E, F, G, H
Molecule details ›
Chains: E, F, G, H
Length: 8 amino acids
Theoretical weight: 912 Da
Source organism: Rattus norvegicus
Expression system: Not provided
UniProt:
  • Canonical: P34901 (Residues: 195-202; Coverage: 5%)
Gene names: Sdc4, Synd4

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 6C1
Spacegroup: P43
Unit cell:
a: 64.2Å b: 64.2Å c: 201.767Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.219 0.244
Expression systems:
  • Escherichia coli
  • Not provided

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