› 5bua

X-ray diffraction
1.81Å resolution

Lysine 120-acetylated P53 DNA binding domain in a complex with DNA.

Released:
DOI: 10.2210/pdb5bua/pdb
PDB entry 5bua coloured by chain, front view.
PDB entry 5bua coloured by chain, side view.
PDB entry 5bua coloured by chain, top view.
Source organisms:
Primary publication:
Structural Basis for p53 Lys120-Acetylation-Dependent DNA-Binding Mode.
Vainer R, Cohen S, Shahar A, Zarivach R, Arbely E
J Mol Biol 428 3013-25 (2016)
PMID: 27338200

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118448 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
Cellular tumor antigen p53 Chain: A
Molecule details ›
Chain: A
Length: 200 amino acids
Theoretical weight: 22.55 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P04637 (Residues: 94-293; Coverage: 51%)
Gene names: P53, TP53
Sequence domains: P53 DNA-binding domain
Structure domains: Immunoglobulin-like
DNA (5'-D(P*GP*GP*AP*CP*AP*TP*GP*TP*CP*C)-3') Chain: B
Molecule details ›
Chain: B
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand ZN 1 x ZN
1 modified residue:
Ligand ALY 1 x ALY

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-2
Spacegroup: C2
Unit cell:
a: 137.252Å b: 48.892Å c: 34.014Å
α: 90° β: 92.6° γ: 90°
R-values:
R R work R free
0.165 0.162 0.214
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided

Quick links

Citations

5 review citations

The multiple mechanisms that regulate p53 activity and cell fate.
Hafner et al. (2019)
4 more

5 mentions without citation

Characterization of a TP53 Somatic Variant of Unknown Function From an Ovarian Cancer Patient Using Organoid Culture and Computational Modeling.
Bi et al. (2020)
4 more