5c1b

X-ray diffraction
3.08Å resolution

p97-delta709-728 in complex with a UFD1-SHP peptide

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
PDBe Complex ID:
PDB-CPX-157193 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Transitional endoplasmic reticulum ATPase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 785 amino acids
Theoretical weight: 86.93 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P55072 (Residues: 2-806; Coverage: 97%)
Gene names: HEL-220, HEL-S-70, VCP
Sequence domains:
Structure domains:
Ubiquitin recognition factor in ER-associated degradation protein 1 Chains: U, V
Molecule details ›
Chains: U, V
Length: 21 amino acids
Theoretical weight: 2.19 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q92890 (Residues: 221-241; Coverage: 7%)
Gene names: UFD1, UFD1L

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P212121
Unit cell:
a: 140.715Å b: 180.664Å c: 254.958Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.2 0.198 0.24
Expression systems:
  • Escherichia coli BL21
  • Not provided