5dpr

X-ray diffraction
2.5Å resolution

Crystal structure of PLEKHM1 LIR-fused human LC3A_2-121

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-190601 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Microtubule-associated proteins 1A/1B light chain 3A; Pleckstrin homology domain-containing family M member 1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 136 amino acids
Theoretical weight: 15.93 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9Y4G2 (Residues: 627-638; Coverage: 1%)
  • Canonical: Q9H492 (Residues: 2-121; Coverage: 99%)
Gene names: KIAA0356, MAP1LC3A, PLEKHM1
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P21
Unit cell:
a: 62.7Å b: 63.082Å c: 84.924Å
α: 90° β: 100.94° γ: 90°
R-values:
R R work R free
0.22 0.218 0.261
Expression system: Escherichia coli BL21(DE3)