5edu

X-ray diffraction
2.79Å resolution

Crystal structure of human histone deacetylase 6 catalytic domain 2 in complex with trichostatin A

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-142601 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Histone deacetylase 6; Maltose/maltodextrin-binding periplasmic protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 745 amino acids
Theoretical weight: 81.52 KDa
Source organisms: Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P0AEX9 (Residues: 27-392; Coverage: 99%)
  • Canonical: Q9UBN7 (Residues: 479-835; Coverage: 29%)
Gene names: HDAC6, JM21, JW3994, KIAA0901, b4034, malE
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: GLC
3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: P212121
Unit cell:
a: 49.262Å b: 149.032Å c: 216.333Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.216 0.213 0.275
Expression system: Escherichia coli BL21(DE3)