› 5gsv

X-ray diffraction
2Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-125662 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
H-2 class I histocompatibility antigen, K-D alpha chain Chain: A
Molecule details ›
Chain: A
Length: 274 amino acids
Theoretical weight: 31.99 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: P01902 (Residues: 22-295; Coverage: 79%)
Gene names: H2-K, H2-K1
Sequence domains:
Structure domains:
Beta-2-microglobulin Chain: B
Molecule details ›
Chain: B
Length: 99 amino acids
Theoretical weight: 11.75 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Sequence domains: Immunoglobulin C1-set domain
Structure domains: Immunoglobulins
Spike protein S2' Chain: C
Molecule details ›
Chain: C
Length: 10 amino acids
Theoretical weight: 1.14 KDa
Source organism: Middle East respiratory syndrome-related coronavirus
Expression system: Not provided
UniProt:
  • Canonical: K9N5Q8 (Residues: 1191-1200; Coverage: 1%)
Gene names: 3, S

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 57.45Å b: 45.853Å c: 71.644Å
α: 90° β: 108.72° γ: 90°
R-values:
R R work R free
0.203 0.2 0.252
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

11 review citations

Vaccines for SARS-CoV-2: Lessons from Other Coronavirus Strains.
Padron-Regalado E. (2020)
10 more

3 mentions without citation

A comprehensive in silico analysis for identification of therapeutic epitopes in HPV16, 18, 31 and 45 oncoproteins.
Panahi et al. (2018)
2 more