5gvi

X-ray diffraction
1.87Å resolution

Zebrafish USP30 in complex with Lys6-linked diubiquitin

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-158827 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Ubiquitin carboxyl-terminal hydrolase 30 Chain: A
Molecule details ›
Chain: A
Length: 444 amino acids
Theoretical weight: 50.49 KDa
Source organism: Danio rerio
Expression system: Escherichia coli
Ubiquitin Chain: B
Molecule details ›
Chain: B
Length: 76 amino acids
Theoretical weight: 8.6 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: P62983 (Residues: 1-76; Coverage: 49%)
Gene names: Rps27a, Uba80, Ubcep1
Sequence domains: Ubiquitin family
Ubiquitin Chain: C
Molecule details ›
Chain: C
Length: 72 amino acids
Theoretical weight: 8.19 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: P62983 (Residues: 1-72; Coverage: 46%)
Gene names: Rps27a, Uba80, Ubcep1
Sequence domains: Ubiquitin family

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P65
Unit cell:
a: 130.27Å b: 130.27Å c: 59.881Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.178 0.176 0.206
Expression system: Escherichia coli