5h7d

X-ray diffraction
2.57Å resolution

Crystal structure of the YgjG-protein A-Zpa963-calmodulin complex

Released:

Function and Biology Details

Reactions catalysed:
An alpha,omega-diamine + 2-oxoglutarate = an omega-aminoaldehyde + L-glutamate
Putrescine + 2-oxoglutarate = L-glutamate + 4-aminobutanal + H(2)O
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
PDBe Complex ID:
PDB-CPX-238624 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Immunoglobulin G-binding protein A; Putrescine aminotransferase Chains: A, B, C, D, I, J, M, N
Molecule details ›
Chains: A, B, C, D, I, J, M, N
Length: 499 amino acids
Theoretical weight: 54.23 KDa
Source organisms: Expression system: Escherichia coli
UniProt:
  • Canonical: P42588 (Residues: 7-453; Coverage: 97%)
  • Canonical: P38507 (Residues: 220-267; Coverage: 10%)
Gene names: JW5510, b3073, patA, spa, ygjG
Sequence domains:
Calmodulin Chains: E, F, G, H, K, L, O, P
Molecule details ›
Chains: E, F, G, H, K, L, O, P
Length: 120 amino acids
Theoretical weight: 13.26 KDa
Source organism: synthetic construct
Expression system: Escherichia coli
UniProt:
  • Canonical: O16305 (Residues: 1-75; Coverage: 50%)
Gene names: T21H3.3, cmd-1
Sequence domains: EF-hand domain pair

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P1
Unit cell:
a: 79.489Å b: 155.376Å c: 155.491Å
α: 84.84° β: 89.68° γ: 89.56°
R-values:
R R work R free
0.208 0.204 0.241
Expression system: Escherichia coli