5imt

X-ray diffraction
2.7Å resolution

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero tetramer
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-146831 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Thiol-activated cytolysin Chain: A
Molecule details ›
Chain: A
Length: 534 amino acids
Theoretical weight: 58.94 KDa
Source organism: Streptococcus intermedius
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9LCB8 (Residues: 34-532; Coverage: 100%)
Gene name: ily
Sequence domains:
CD59 glycoprotein Chain: D
Molecule details ›
Chain: D
Length: 77 amino acids
Theoretical weight: 8.93 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P13987 (Residues: 26-102; Coverage: 75%)
Gene names: CD59, MIC11, MIN1, MIN2, MIN3, MSK21
Sequence domains: u-PAR/Ly-6 domain
Structure domains: CD59

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: C2221
Unit cell:
a: 93.73Å b: 166.56Å c: 118.25Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.21 0.208 0.257
Expression system: Escherichia coli