› 5ind

X-ray diffraction
2.13Å resolution

Crystal structure of HLA-B5801, a protective HLA allele for HIV-1 infection

Released:
DOI: 10.2210/pdb5ind/pdb
PDB entry 5ind coloured by chain, front view.
PDB entry 5ind coloured by chain, side view.
PDB entry 5ind coloured by chain, top view.
Source organisms:
Primary publication:
Crystal structure of HLA-B*5801, a protective HLA allele for HIV-1 infection.
Li X, Lamothe PA, Ng R, Xu S, Teng M, Walker BD, Wang JH
Protein Cell 7 761-765 (2016)
PMID: 27638468

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-135145 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
HLA class I histocompatibility antigen, B alpha chain Chains: A, C
Molecule details ›
Chains: A, C
Length: 277 amino acids
Theoretical weight: 31.97 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P01889 (Residues: 25-300; Coverage: 82%)
Gene names: HLA-B, HLAB
Sequence domains:
Structure domains:
Beta-2-microglobulin Chains: B, D
Molecule details ›
Chains: B, D
Length: 99 amino acids
Theoretical weight: 11.75 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Sequence domains: Immunoglobulin C1-set domain
Structure domains: Immunoglobulins
Capsid protein p24 Chains: E, F
Molecule details ›
Chains: E, F
Length: 9 amino acids
Theoretical weight: 1.08 KDa
Source organism: unidentified
Expression system: Not provided
UniProt:
  • Canonical: P04591 (Residues: 308-316; Coverage: 2%)
Gene name: gag

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 69.413Å b: 82.28Å c: 157.72Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.186 0.229
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided

Quick links

Citations

5 citation in other articles

The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands.
Gfeller et al. (2018)
4 more

3 mentions without citation

Association between source-specific particulate matter air pollution and hs-CRP: local traffic and industrial emissions.
Hennig et al. (2014)
2 more