5ity

X-ray diffraction
2.48Å resolution

Crystal Structure of Human NEIL1(P2G) bound to duplex DNA containing Thymine Glycol

Released:

Function and Biology Details

Reaction catalysed:
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-118806 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
Endonuclease 8-like 1 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 400 amino acids
Theoretical weight: 44.89 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96FI4 (Residues: 1-390; Coverage: 100%)
Gene name: NEIL1
Sequence domains:
Structure domains:
DNA (26-MER) Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 26 nucleotides
Theoretical weight: 8 KDa
Source organism: unidentified
Expression system: Not provided

Ligands and Environments

1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P212121
Unit cell:
a: 73.624Å b: 108.706Å c: 169.972Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.176 0.225
Expression systems:
  • Escherichia coli
  • Not provided