› 5j8p

X-ray diffraction
1.55Å resolution

Lys27-linked diubiquitin

Released:
DOI: 10.2210/pdb5j8p/pdb
PDB entry 5j8p coloured by chain, front view.
PDB entry 5j8p coloured by chain, side view.
PDB entry 5j8p coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Pan M, Gao S, Zheng Y

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-158833 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin Chain: A
Molecule details ›
Chain: A
Length: 76 amino acids
Theoretical weight: 8.58 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P62987 (Residues: 1-76; Coverage: 59%)
Gene names: UBA52, UBCEP2
Sequence domains: Ubiquitin family
Ubiquitin Chain: B
Molecule details ›
Chain: B
Length: 76 amino acids
Theoretical weight: 8.57 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P62987 (Residues: 1-75; Coverage: 59%)
Gene names: UBA52, UBCEP2
Sequence domains: Ubiquitin family

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
17 modified residues:
Ligand DNE 1 x DNE
Ligand DGN 6 x DGN
Ligand DIL 7 x DIL
Ligand DPN 2 x DPN
Ligand DVA 4 x DVA
Ligand DLY 7 x DLY
Ligand DTH 7 x DTH
Ligand DLE 9 x DLE
Ligand DGL 6 x DGL
Ligand DPR 3 x DPR
Ligand DSN 3 x DSN
Ligand DAS 5 x DAS
Ligand DSG 2 x DSG
Ligand DAL 3 x DAL
Ligand DAR 4 x DAR
Ligand DTY 1 x DTY
Ligand DHI 1 x DHI

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: C2
Unit cell:
a: 44.828Å b: 63.411Å c: 52.844Å
α: 90° β: 109.16° γ: 90°
R-values:
R R work R free
0.237 0.234 0.295
Expression system: Not provided

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