› 5jby

X-ray diffraction
1.99Å resolution

Lys27-linked triubiquitin

Released:
DOI: 10.2210/pdb5jby/pdb
PDB entry 5jby coloured by chain, front view.
PDB entry 5jby coloured by chain, side view.
PDB entry 5jby coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Pan M, Gao S, Zheng Y

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-158845 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 76 amino acids
Theoretical weight: 8.58 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P62987 (Residues: 1-76; Coverage: 59%)
Gene names: UBA52, UBCEP2
Sequence domains: Ubiquitin family
Ubiquitin Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 76 amino acids
Theoretical weight: 8.57 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P62987 (Residues: 1-75; Coverage: 59%)
Gene names: UBA52, UBCEP2
Sequence domains: Ubiquitin family

Ligands and Environments

No bound ligands
17 modified residues:
Ligand DNE 3 x DNE
Ligand DGN 18 x DGN
Ligand DIL 21 x DIL
Ligand DPN 6 x DPN
Ligand DVA 12 x DVA
Ligand DLY 21 x DLY
Ligand DTH 21 x DTH
Ligand DLE 27 x DLE
Ligand DGL 18 x DGL
Ligand DPR 9 x DPR
Ligand DSN 9 x DSN
Ligand DAS 15 x DAS
Ligand DSG 6 x DSG
Ligand DAL 9 x DAL
Ligand DAR 12 x DAR
Ligand DTY 3 x DTY
Ligand DHI 3 x DHI

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P1
Unit cell:
a: 51.758Å b: 51.749Å c: 54.977Å
α: 90.02° β: 118.15° γ: 119.95°
R-values:
R R work R free
0.241 0.237 0.308
Expression system: Not provided

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