› 5jno

X-ray diffraction
2.2Å resolution

Crystal structure of the BD1-NTPR complex from BEND3 and PICH

Released:
DOI: 10.2210/pdb5jno/pdb
PDB entry 5jno coloured by chain, front view.
PDB entry 5jno coloured by chain, side view.
PDB entry 5jno coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Pitchai G, Mesa P, Hickson ID, Montoya G

Function and Biology Details

Reaction catalysed: 
ATP + H(2)O = ADP + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-173855 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
BEN domain-containing protein 3 Chain: A
Molecule details ›
Chain: A
Length: 112 amino acids
Theoretical weight: 12.87 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5T5X7 (Residues: 236-347; Coverage: 14%)
Gene names: BEND3, KIAA1553
Sequence domains: BEN domain
DNA excision repair protein ERCC-6-like Chain: B
Molecule details ›
Chain: B
Length: 57 amino acids
Theoretical weight: 6.52 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q2NKX8 (Residues: 10-66; Coverage: 5%)
Gene names: ERCC6L, PICH

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P6122
Unit cell:
a: 47.28Å b: 47.28Å c: 431.579Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.222 0.222 0.237
Expression system: Escherichia coli BL21(DE3)

Quick links