› 5kpf

X-ray diffraction
1.7Å resolution

Crystal structure of cytochrome c - Phenyl-trisulfonatocalix[4]arene complex

Released:
DOI: 10.2210/pdb5kpf/pdb
PDB entry 5kpf coloured by chain, front view.
PDB entry 5kpf coloured by chain, side view.
PDB entry 5kpf coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Protein Recognition by Functionalized Sulfonatocalix[4]arenes.
Doolan AM, Rennie ML, Crowley PB
Chemistry 24 984-991 (2018)
PMID: 29125201

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132226 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P00044 (Residues: 3-109; Coverage: 98%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

3 bound ligands:
Ligand HEC 2 x HEC
Ligand NO3 1 x NO3
Ligand 6VJ 1 x 6VJ
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: C2221
Unit cell:
a: 34.417Å b: 61.085Å c: 173.403Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.16 0.158 0.207
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Synthetic Receptors for the Recognition and Discrimination of Post-Translationally Methylated Lysines.
Gruber T. (2018)
1 more

3 mentions without citation

Multidrug Resistance in Mammals and Fungi-From MDR to PDR: A Rocky Road from Atomic Structures to Transport Mechanisms.
Khunweeraphong et al. (2021)
2 more