› 5lft

X-ray diffraction
1.25Å resolution

Crystal structure of cytochrome c - Bromo-trisulfonatocalix[4]arene complexes

Released:
DOI: 10.2210/pdb5lft/pdb
PDB entry 5lft coloured by chain, front view.
PDB entry 5lft coloured by chain, side view.
PDB entry 5lft coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Protein Recognition by Functionalized Sulfonatocalix[4]arenes.
Doolan AM, Rennie ML, Crowley PB
Chemistry 24 984-991 (2018)
PMID: 29125201

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132226 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chain: A
Molecule details ›
Chain: A
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P00044 (Residues: 3-109; Coverage: 98%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

3 bound ligands:
Ligand HEC 1 x HEC
Ligand BR 2 x BR
Ligand 6VB 3 x 6VB
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Unit cell:
a: 34.746Å b: 38.045Å c: 89.65Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.213 0.239
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Synthetic Receptors for the Recognition and Discrimination of Post-Translationally Methylated Lysines.
Gruber T. (2018)
1 more

2 mentions without citation

Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins.
Di Costanzo et al. (2020)
1 more