› 5lpg

X-ray diffraction
1.7Å resolution

Structure of NUDT15 in complex with 6-thio-GMP

Released:
DOI: 10.2210/pdb5lpg/pdb
PDB entry 5lpg coloured by chain, front view.
PDB entry 5lpg coloured by chain, side view.
PDB entry 5lpg coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
NUDT15 Hydrolyzes 6-Thio-DeoxyGTP to Mediate the Anticancer Efficacy of 6-Thioguanine.
Valerie NC, Hagenkort A, Page BD, Masuyer G, Rehling D, Carter M, Bevc L, Herr P, Homan E, Sheppard NG, Stenmark P, Jemth AS, Helleday T
Cancer Res 76 5501-11 (2016)
PMID: 27530327

Function and Biology Details

Reaction catalysed: 
A nucleoside triphosphate + H(2)O = a nucleotide + diphosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192629 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleotide triphosphate diphosphatase NUDT15 Chains: A, B
Molecule details ›
Chains: A, B
Length: 164 amino acids
Theoretical weight: 18.64 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9NV35 (Residues: 1-164; Coverage: 100%)
Gene names: MTH2, NUDT15
Sequence domains: NUDIX domain
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase

Ligands and Environments

2 bound ligands:
Ligand MG 5 x MG
Ligand 71V 1 x 71V
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P212121
Unit cell:
a: 46.502Å b: 49.05Å c: 135.56Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.218 0.216 0.251
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

10 review citations

Nucleobase and Nucleoside Analogues: Resistance and Re-Sensitisation at the Level of Pharmacokinetics, Pharmacodynamics and Metabolism.
Tsesmetzis et al. (2018)
9 more

10 mentions without citation

Novel variants in NUDT15 and thiopurine intolerance in children with acute lymphoblastic leukemia from diverse ancestry.
Moriyama et al. (2017)
9 more