5lxh

X-ray diffraction
1.58Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-190493 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Gamma-aminobutyric acid receptor-associated protein-like 1 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 123 amino acids
Theoretical weight: 14.6 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9H0R8 (Residues: 1-117; Coverage: 100%)
Gene names: GABARAPL1, GEC1
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Cysteine protease ATG4B Chains: E, F, G
Molecule details ›
Chains: E, F, G
Length: 10 amino acids
Theoretical weight: 1.21 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9Y4P1 (Residues: 384-393; Coverage: 3%)
Gene names: APG4B, ATG4B, AUTL1, KIAA0943

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: P212121
Unit cell:
a: 51.52Å b: 79.885Å c: 97.643Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.205 0.238
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided