› 5lyc

X-ray diffraction
1.8Å resolution

Cytochrome c in complex with phosphonato-calix[6]arene

Released:
DOI: 10.2210/pdb5lyc/pdb
PDB entry 5lyc coloured by chain, front view.
PDB entry 5lyc coloured by chain, side view.
PDB entry 5lyc coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Protein Dimerization on a Phosphonated Calix[6]arene Disc.
Rennie ML, Doolan AM, Raston CL, Crowley PB
Angew Chem Int Ed Engl 56 5517-5521 (2017)
PMID: 28407337

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132233 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P00044 (Residues: 3-109; Coverage: 98%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

3 bound ligands:
Ligand HEC 2 x HEC
Ligand 7AZ 2 x 7AZ
Ligand SO4 5 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P43212
Unit cell:
a: 54.57Å b: 54.57Å c: 208.01Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.17 0.168 0.199
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

3 review citations

Protein Assembly by Design.
Zhu et al. (2021)
2 more

5 mentions without citation

The requirement for cobalt in vitamin B12: A paradigm for protein metalation.
Osman et al. (2021)
4 more