5mza

X-ray diffraction
2.78Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-138634 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Erythrocyte membrane protein 1, PfEMP1 Chain: A
Molecule details ›
Chain: A
Length: 488 amino acids
Theoretical weight: 55.52 KDa
Source organism: Plasmodium falciparum 3D7
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8IHM0 (Residues: 728-1214; Coverage: 16%)
Gene name: PF3D7_1150400
Sequence domains: Duffy binding domain
Intercellular adhesion molecule 1 Chain: B
Molecule details ›
Chain: B
Length: 186 amino acids
Theoretical weight: 20.5 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P05362 (Residues: 28-212; Coverage: 37%)
Gene name: ICAM1
Sequence domains: Intercellular adhesion molecule (ICAM), N-terminal domain
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P212121
Unit cell:
a: 68.639Å b: 109.83Å c: 112.83Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.205 0.236
Expression systems:
  • Escherichia coli
  • Homo sapiens