› 5ncv

X-ray diffraction
1.5Å resolution

Crystal Structure of Cytochrome c in complex with p-Methylphosphonatocalix[4]arene

Released:
DOI: 10.2210/pdb5ncv/pdb
PDB entry 5ncv coloured by chain, front view.
PDB entry 5ncv coloured by chain, side view.
PDB entry 5ncv coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Phosphonated Calixarene as a ""Molecular Glue"" for Protein Crystallization
Alex JM, Rennie ML, Volpi S, Sansone F, Casnati A, Crowley PB
Cryst Growth Des 18 2467-2473 (2018)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132226 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P00044 (Residues: 3-109; Coverage: 98%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

3 bound ligands:
Ligand HEC 2 x HEC
Ligand 8TE 3 x 8TE
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P21
Unit cell:
a: 28.917Å b: 80.227Å c: 47.807Å
α: 90° β: 93.07° γ: 90°
R-values:
R R work R free
0.172 0.17 0.201
Expression system: Escherichia coli BL21(DE3)

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