5npv

X-ray diffraction
3.1Å resolution

Structure of human ATG5-ATG16L1(ATG5BD) complex (I4)

Released:
Source organism: Homo sapiens
Primary publication:
Identification, biochemical characterization and crystallization of the central region of human ATG16L1.
Acta Crystallogr F Struct Biol Commun 73 560-567 (2017)
PMID: 28994404

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-179296 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Autophagy protein 5 Chains: A, C
Molecule details ›
Chains: A, C
Length: 282 amino acids
Theoretical weight: 33.19 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9H1Y0 (Residues: 1-275; Coverage: 100%)
Gene names: APG5L, ASP, ATG5
Sequence domains:
Structure domains:
Autophagy-related protein 16-1 Chains: B, D
Molecule details ›
Chains: B, D
Length: 301 amino acids
Theoretical weight: 34.79 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q676U5 (Residues: 11-307; Coverage: 49%)
Gene names: APG16L, ATG16L1, UNQ9393/PRO34307
Sequence domains: Autophagy protein 16 (ATG16)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: I4
Unit cell:
a: 143.58Å b: 143.58Å c: 62.32Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.254 0.253 0.278
Expression system: Escherichia coli