5oy9

X-ray diffraction
3.6Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-134045 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Glycoprotein G Chain: A
Molecule details ›
Chain: A
Length: 410 amino acids
Theoretical weight: 46.1 KDa
Source organism: Vesicular stomatitis Indiana virus strain Mudd-Summers
UniProt:
  • Canonical: P0C2X0 (Residues: 1-410; Coverage: 97%)
Gene name: G
Sequence domains: Rhabdovirus spike glycoprotein
Low-density lipoprotein receptor Chain: D
Molecule details ›
Chain: D
Length: 37 amino acids
Theoretical weight: 4.13 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P01130 (Residues: 108-144; Coverage: 4%)
Gene name: LDLR
Sequence domains: Low-density lipoprotein receptor domain class A

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
2 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P622
Unit cell:
a: 122.35Å b: 122.35Å c: 197.81Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.237 0.236 0.268
Expression system: Escherichia coli