Function and Biology Details
Reactions catalysed:
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
3'-end directed exonucleolytic cleavage of viral RNA-DNA hybrid
Endohydrolysis of RNA in RNA/DNA hybrids. Three different cleavage modes: 1. sequence-specific internal cleavage of RNA. Human immunodeficiency virus type 1 and Moloney murine leukemia virus enzymes prefer to cleave the RNA strand one nucleotide away from the RNA-DNA junction. 2. RNA 5'-end directed cleavage 13-19 nucleotides from the RNA end. 3. DNA 3'-end directed cleavage 15-20 nucleotides away from the primer terminus.
Specific for a P1 residue that is hydrophobic, and P1' variable, but often Pro.
Biochemical function:
Biological process:
Cellular component:
- not assigned
Structure analysis Details
Assembly composition:
monomeric (preferred)
Assembly name:
Protease (preferred)
PDBe Complex ID:
PDB-CPX-138004 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
p51 RT
Molecule details ›
Chain: A
Length: 90 amino acids
Theoretical weight: 10.46 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli
UniProt:
Sequence domains: Reverse transcriptase thumb domain
Structure domains: Alpha-Beta Plaits
Length: 90 amino acids
Theoretical weight: 10.46 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli
UniProt:
- Canonical:
P04585 (Residues: 824-905; Coverage: 6%)
Sequence domains: Reverse transcriptase thumb domain
Structure domains: Alpha-Beta Plaits
Ligands and Environments
No bound ligands
No modified residues
Experiments and Validation Details
Chemical shift assignment:
82%
Refinement method:
simulated annealing
Expression system: Escherichia coli
