› 5tso

X-ray diffraction
1.9Å resolution

CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PIG MUSCLE COMPLEXED WITH ORTHOPHENANTHROLINE AT 1.90 ANGSTROM RESOLUTION

Released:
DOI: 10.2210/pdb5tso/pdb
PDB entry 5tso coloured by chain, front view.
PDB entry 5tso coloured by chain, side view.
PDB entry 5tso coloured by chain, top view.
Source organism: Sus scrofa
Entry authors: Dimova M, Devedjiev YD

Function and Biology Details

Reaction catalysed: 
D-glyceraldehyde 3-phosphate + phosphate + NAD(+) = 3-phospho-D-glyceroyl phosphate + NADH
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132426 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glyceraldehyde-3-phosphate dehydrogenase Chains: P, R, S
Molecule details ›
Chains: P, R, S
Length: 333 amino acids
Theoretical weight: 35.88 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: P00355 (Residues: 1-333; Coverage: 100%)
Gene names: GAPD, GAPDH
Sequence domains:
Structure domains: Dihydrodipicolinate Reductase; domain 2

Ligands and Environments


Cofactor: Ligand NAD 3 x NAD
3 bound ligands:
Ligand SO4 11 x SO4
Ligand GOL 7 x GOL
Ligand PHN 4 x PHN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 17-ID
Spacegroup: I222
Unit cell:
a: 86.48Å b: 133.52Å c: 210.32Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.133 0.132 0.2

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