› 5up9

X-ray diffraction
2.45Å resolution

Crystal Structure of Zn-bound Human Heavy-Chain ferritin variant 122H-delta C-star with para-xylenedihydroxamate

Released:
DOI: 10.2210/pdb5up9/pdb
PDB entry 5up9 coloured by chain, front view.
PDB entry 5up9 coloured by chain, side view.
PDB entry 5up9 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Synthetic Modularity of Protein-Metal-Organic Frameworks.
Bailey JB, Zhang L, Chiong JA, Ahn S, Tezcan FA
J Am Chem Soc 139 8160-8166 (2017)
PMID: 28590729

Function and Biology Details

Reaction catalysed: 
4 Fe(2+) + 4 H(+) + O(2) = 4 Fe(3+) + 2 H(2)O
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 24-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136244 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ferritin heavy chain Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 182 amino acids
Theoretical weight: 21.12 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P02794 (Residues: 2-183; Coverage: 100%)
Gene names: FTH, FTH1, FTHL6, OK/SW-cl.84, PIG15
Sequence domains: Ferritin-like domain
Structure domains: Ferritin

Ligands and Environments

4 bound ligands:
Ligand ZN 19 x ZN
Ligand PGE 5 x PGE
Ligand PEG 19 x PEG
Ligand BYX 1 x BYX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL12-2
Spacegroup: I4
Unit cell:
a: 149.883Å b: 149.883Å c: 162.228Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.243 0.241 0.289
Expression system: Escherichia coli

Quick links

Citations

9 review citations

Self-assembly as a key player for materials nanoarchitectonics.
Ariga et al. (2019)
8 more

1 mention without citation

Elucidating the Interaction of Human Ferritin with Quercetin and Naringenin: Implication of Natural Products in Neurodegenerative Diseases: Molecular Docking and Dynamics Simulation Insight.
Shamsi et al. (2021)