› 5whf

X-ray diffraction
2.25Å resolution

Crystal structure of vimentin coil 1B packed in a high-order filamentous form

Released:
DOI: 10.2210/pdb5whf/pdb
PDB entry 5whf coloured by chain, front view.
PDB entry 5whf coloured by chain, side view.
PDB entry 5whf coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament.
Pang AH, Obiero JM, Kulczyk AW, Sviripa VM, Tsodikov OV
FEBS J 285 2888-2899 (2018)
PMID: 29905014

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo hexadecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-140283 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vimentin Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 90 amino acids
Theoretical weight: 10.82 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P08670 (Residues: 153-238; Coverage: 19%)
Gene name: VIM

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P21
Unit cell:
a: 39.99Å b: 77.27Å c: 123.39Å
α: 90° β: 95.03° γ: 90°
R-values:
R R work R free
0.237 0.235 0.282
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 review citation

Recent insight into intermediate filament structure.
Eldirany et al. (2021)
6 other articles

4 mentions without citation

A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament.
Pang et al. (2018)
3 more