› 5x3m

X-ray diffraction
1.82Å resolution

crystal structure of p-Ub-S65-NH2

Released:
DOI: 10.2210/pdb5x3m/pdb
PDB entry 5x3m coloured by chain, front view.
PDB entry 5x3m coloured by chain, side view.
PDB entry 5x3m coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Man P, Shuai G, Qian Q, Lei L

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-143265 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin Chain: A
Molecule details ›
Chain: A
Length: 76 amino acids
Theoretical weight: 8.66 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P0CG47 (Residues: 153-228; Coverage: 33%)
Gene name: UBB
Sequence domains: Ubiquitin family
D-ubiquitin Chain: D
Molecule details ›
Chain: D
Length: 76 amino acids
Theoretical weight: 8.59 KDa
Source organism: Homo sapiens
Expression system: Not provided

Ligands and Environments

No bound ligands
18 modified residues:
Ligand SEP 1 x SEP
Ligand DNE 1 x DNE
Ligand DGN 6 x DGN
Ligand DIL 7 x DIL
Ligand DPN 2 x DPN
Ligand DVA 4 x DVA
Ligand DLY 7 x DLY
Ligand DTH 7 x DTH
Ligand DLE 9 x DLE
Ligand DGL 7 x DGL
Ligand DPR 3 x DPR
Ligand DSN 2 x DSN
Ligand DAS 5 x DAS
Ligand DSG 2 x DSG
Ligand DAL 2 x DAL
Ligand DAR 4 x DAR
Ligand DTY 1 x DTY
Ligand DHI 1 x DHI

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P1
Unit cell:
a: 28.914Å b: 29.969Å c: 39.726Å
α: 81.91° β: 72.38° γ: 62.43°
R-values:
R R work R free
0.21 0.206 0.27
Expression system: Not provided

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