› 5yb3

X-ray diffraction
2.04Å resolution

Crystal structure of HP23L/N36

Released:
DOI: 10.2210/pdb5yb3/pdb
PDB entry 5yb3 coloured by chain, front view.
PDB entry 5yb3 coloured by chain, side view.
PDB entry 5yb3 coloured by chain, top view.
Source organism: Human immunodeficiency virus 1
Primary publication:
Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket.
Zhang X, Zhu Y, Hu H, Zhang S, Wang P, Chong H, He J, Wang X, He Y
Front Cell Infect Microbiol 8 51 (2018)
PMID: 29535974

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137982 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Transmembrane protein gp41 Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 36 amino acids
Theoretical weight: 4.13 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided
UniProt:
  • Canonical: P04578 (Residues: 546-581; Coverage: 4%)
Gene name: env
HP23L Chains: G, H, I
Molecule details ›
Chains: G, H, I
Length: 23 amino acids
Theoretical weight: 3 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: P43212
Unit cell:
a: 51.148Å b: 51.148Å c: 168.736Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.231
Expression system: Not provided

Quick links

Citations

9 citation in other articles

Design and Characterization of Cholesterylated Peptide HIV-1/2 Fusion Inhibitors with Extremely Potent and Long-Lasting Antiviral Activity.
Zhu et al. (2019)
8 more

1 mention without citation

Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket.
Zhang et al. (2018)