› 5zcj

X-ray diffraction
2Å resolution

Crystal structure of complex

Released:
DOI: 10.2210/pdb5zcj/pdb
PDB entry 5zcj coloured by chain, front view.
PDB entry 5zcj coloured by chain, side view.
PDB entry 5zcj coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Wang J, Yuan Z, Cui Y, Xie R, Wang M, Ma Y, Yu X, Liu X

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171426 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Tudor-interacting repair regulator protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 210 amino acids
Theoretical weight: 23.21 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9BRJ7 (Residues: 6-211; Coverage: 98%)
Gene names: NUDT16L1, SDOS, TIRR
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase
TP53-binding protein 1 Chain: C
Molecule details ›
Chain: C
Length: 180 amino acids
Theoretical weight: 19.75 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q12888 (Residues: 1459-1634; Coverage: 9%)
Gene name: TP53BP1
Sequence domains: Tumour suppressor p53-binding protein-1 Tudor
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: C2
Unit cell:
a: 111.144Å b: 103.922Å c: 61.47Å
α: 90° β: 95.46° γ: 90°
R-values:
R R work R free
0.191 0.19 0.219
Expression system: Escherichia coli BL21(DE3)

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