› 5a79

Electron Microscopy
4.1Å resolution

Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM

Released:
DOI: 10.2210/pdb5a79/pdb
PDB entry 5a79 coloured by chain, front view.
PDB entry 5a79 coloured by chain, side view.
PDB entry 5a79 coloured by chain, top view.
Source organisms:
Primary publication:
Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy.
Clare DK, Pechnikova EV, Skurat EV, Makarov VV, Sokolova OS, Solovyev AG, Orlova EV
Structure 23 1815-1826 (2015)
PMID: 26278173
Related structures: EMD-3073

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 222-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-138219 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Capsid protein Chain: A
Molecule details ›
Chain: A
Length: 198 amino acids
Theoretical weight: 22.56 KDa
Source organism: Barley stripe mosaic virus
Expression system: Agrobacterium tumefaciens
UniProt:
  • Canonical: P04866 (Residues: 1-198; Coverage: 100%)
Sequence domains: Virus coat protein (TMV like)
RNA Chain: R
Molecule details ›
Chain: R
Length: 3 nucleotides
Theoretical weight: 959 Da
Source organism: Tobacco mosaic virus strain OM

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.1Å
Relevant EMDB volumes: EMD-3073
Expression system: Agrobacterium tumefaciens

Quick links

Citations

6 review citations

Cryo-electron Microscopy Analysis of Structurally Heterogeneous Macromolecular Complexes.
Jonić S. (2016)
5 more