› 5afo

X-ray diffraction
1.82Å resolution

Long Polar Fimbriae adhesin LpfD from the adherent invasive E. coli strain LF82

Released:
DOI: 10.2210/pdb5afo/pdb
PDB entry 5afo coloured by chain, front view.
PDB entry 5afo coloured by chain, side view.
PDB entry 5afo coloured by chain, top view.
Source organism: Escherichia coli LF82
Primary publication:
Structural and adhesive properties of the long polar fimbriae protein LpfD from adherent-invasive Escherichia coli.
Coppens F, Iyyathurai J, Ruer S, Fioravanti A, Taganna J, Vereecke L, De Greve H, Remaut H
Acta Crystallogr D Biol Crystallogr 71 1615-26 (2015)
PMID: 26249343

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-102485 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Fimbrial-type adhesion domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 362 amino acids
Theoretical weight: 38.63 KDa
Source organism: Escherichia coli LF82
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0M3KL51 (Residues: 1-326; Coverage: 90%)
Sequence domains: Fimbrial protein

Ligands and Environments

1 bound ligand:
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: C2221
Unit cell:
a: 49.01Å b: 372.13Å c: 99.03Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.168 0.167 0.196
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

Adherent-invasive Escherichia coli in inflammatory bowel disease.
Palmela et al. (2018)
1 more