› 5b4y

X-ray diffraction
1.9Å resolution

Crystal structure of the LA12 fragment of ApoER2

Released:
DOI: 10.2210/pdb5b4y/pdb
PDB entry 5b4y coloured by chain, front view.
PDB entry 5b4y coloured by chain, side view.
PDB entry 5b4y coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Nogi T, Tabata S, Hirai H, Yasui N, Takagi J

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171911 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Low-density lipoprotein receptor-related protein 8 Chain: B
Molecule details ›
Chain: B
Length: 85 amino acids
Theoretical weight: 9.62 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q14114 (Residues: 42-124; Coverage: 9%)
Gene names: APOER2, LRP8
Sequence domains: Low-density lipoprotein receptor domain class A

Ligands and Environments

1 bound ligand:
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P212121
Unit cell:
a: 31.162Å b: 41.78Å c: 55.063Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.21 0.247
Expression system: Escherichia coli

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