5bqm

X-ray diffraction
3.1Å resolution

Crystal structure of SXN101959, a Clostridium botulinum neurotoxin type D derivative and targeted secretion inhibitor

Released:

Function and Biology Details

Reaction catalysed:
Limited hydrolysis of proteins of the neuroexocytosis apparatus, synaptobrevin (also known as neuronal vesicle-associated membrane protein, VAMP), synaptosome-associated protein of 25 kDa (SNAP25) or syntaxin. No detected action on small molecule substrates.
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-134168 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Botulinum neurotoxin D light chain Chains: A, C
Molecule details ›
Chains: A, C
Length: 453 amino acids
Theoretical weight: 51.68 KDa
Source organism: Clostridium botulinum
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P19321 (Residues: 1-437; Coverage: 34%)
Gene name: botD
Sequence domains: Clostridial neurotoxin zinc protease
Structure domains: Metalloproteases ("zincins"), catalytic domain like
Botulinum neurotoxin D heavy chain; Somatoliberin Chains: B, D
Molecule details ›
Chains: B, D
Length: 474 amino acids
Theoretical weight: 53.72 KDa
Source organisms: Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P19321 (Residues: 450-861; Coverage: 32%)
  • Canonical: P01286 (Residues: 32-73; Coverage: 48%)
Gene names: GHRF, GHRH, botD
Sequence domains:
Structure domains: Clostridium botulinum neurotoxin b, "coiled-coil" domain

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 88.201Å b: 143.916Å c: 172.762Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.252 0.25 0.295
Expression system: Escherichia coli BL21(DE3)