5cdq

X-ray diffraction
2.95Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118476 (preferred)
Entry contents:
2 distinct polypeptide molecules
1 distinct DNA molecule
Macromolecules (3 distinct):
DNA gyrase subunit A Chains: A, C, R, T
Molecule details ›
Chains: A, C, R, T
Length: 481 amino acids
Theoretical weight: 54.66 KDa
Source organism: Staphylococcus aureus subsp. aureus N315
Expression system: Escherichia coli
UniProt:
  • Canonical: Q99XG5 (Residues: 10-490; Coverage: 54%)
Gene names: SA0006, gyrA
Sequence domains: DNA gyrase/topoisomerase IV, subunit A
DNA gyrase subunit B Chains: B, D, S, U
Molecule details ›
Chains: B, D, S, U
Length: 193 amino acids
Theoretical weight: 21.61 KDa
Source organism: Staphylococcus aureus subsp. aureus N315
Expression system: Escherichia coli
UniProt:
  • Canonical: P66937 (Residues: 414-543, 580-640; Coverage: 30%)
Gene names: SA0005, gyrB
Sequence domains:
DNA (5'-D(P*GP*AP*GP*CP*GP*TP*AP*T*GP*GP*CP*CP*AP*TP*AP*CP*GP*CP*TP*T)-3') Chains: E, F, V, W
Molecule details ›
Chains: E, F, V, W
Length: 20 nucleotides
Theoretical weight: 6.15 KDa

Ligands and Environments

3 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P21
Unit cell:
a: 87.93Å b: 170.55Å c: 125.67Å
α: 90° β: 103.3° γ: 90°
R-values:
R R work R free
0.177 0.174 0.218
Expression system: Escherichia coli