› 5dah

X-ray diffraction
2.61Å resolution

Crystal structure of PZP domain of human AF10 protein fused with Histone H3 peptide

Released:
DOI: 10.2210/pdb5dah/pdb
PDB entry 5dah coloured by chain, front view.
PDB entry 5dah coloured by chain, side view.
PDB entry 5dah coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
The PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79.
Chen S, Yang Z, Wilkinson AW, Deshpande AJ, Sidoli S, Krajewski K, Strahl BD, Garcia BA, Armstrong SA, Patel DJ, Gozani O
Mol Cell 60 319-27 (2015)
PMID: 26439302

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
hetero dimer (preferred)
hetero tetramer
Assembly name:
PDBe Complex ID:
PDB-CPX-157214 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Protein AF-10 Chains: A, B
Molecule details ›
Chains: A, B
Length: 208 amino acids
Theoretical weight: 23.02 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P55197 (Residues: 1-208; Coverage: 20%)
Gene names: AF10, MLLT10
Sequence domains:
Histone H3.1 Chains: C, D
Molecule details ›
Chains: C, D
Length: 11 amino acids
Theoretical weight: 1.15 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P68431 (Residues: 20-30; Coverage: 8%)
Gene names: H3C1, H3C10, H3C11, H3C12, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3FA, H3FB, H3FC HIST1H3C, H3FD, H3FF, H3FH, H3FI, H3FJ, H3FK, H3FL, HIST1H3A, HIST1H3B, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J

Ligands and Environments

2 bound ligands:
Ligand ZN 10 x ZN
Ligand SO4 3 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P21
Unit cell:
a: 42.905Å b: 79.995Å c: 59.287Å
α: 90° β: 102.01° γ: 90°
R-values:
R R work R free
0.182 0.176 0.24
Expression system: Escherichia coli

Quick links

Citations

10 review citations

MLL-Rearranged Leukemias-An Update on Science and Clinical Approaches.
Winters et al. (2017)
9 more

7 mentions without citation

Insights into newly discovered marks and readers of epigenetic information.
Andrews et al. (2016)
6 more