5dgy

X-ray diffraction
7.7Å resolution

Function and Biology Details

Reaction catalysed:
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-132953 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Endolysin; Rhodopsin; S-arrestin Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 906 amino acids
Theoretical weight: 100.86 KDa
Source organisms: Expression system: Homo sapiens
UniProt:
  • Canonical: P00720 (Residues: 2-161; Coverage: 98%)
  • Canonical: P08100 (Residues: 1-348; Coverage: 100%)
  • Canonical: P20443 (Residues: 10-392; Coverage: 95%)
Gene names: E, OPN2, RHO, Sag
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P212121
Unit cell:
a: 107.484Å b: 107.258Å c: 460.314Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.288 0.285 0.335
Expression system: Homo sapiens