› 5ere

X-ray diffraction
2Å resolution

Extracellular ligand binding receptor from Desulfohalobium retbaense DSM5692

Released:
DOI: 10.2210/pdb5ere/pdb
PDB entry 5ere coloured by chain, front view.
PDB entry 5ere coloured by chain, side view.
PDB entry 5ere coloured by chain, top view.
Source organism: Desulfohalobium retbaense DSM 5692
Entry authors: Cuff M, Wu R, Endres M, Pokkuluri PR, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-111840 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Leucine-binding protein domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 568 amino acids
Theoretical weight: 62.64 KDa
Source organism: Desulfohalobium retbaense DSM 5692
Expression system: Escherichia coli
UniProt:
  • Canonical: C8WZ86 (Residues: 32-599; Coverage: 100%)
Gene name: Dret_0059
Sequence domains: Periplasmic binding protein

Ligands and Environments

6 bound ligands:
Ligand COI 1 x COI
Ligand CYT 1 x CYT
Ligand ACY 1 x ACY
Ligand CA 1 x CA
Ligand GOL 1 x GOL
Ligand EDO 2 x EDO
1 modified residue:
Ligand MSE 9 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P41212
Unit cell:
a: 104.946Å b: 104.946Å c: 140.181Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.175 0.172 0.226
Expression system: Escherichia coli

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