› 5f4j

X-ray diffraction
1.93Å resolution

Protruding domain of GII.17 norovirus Saitama/T87

Released:
DOI: 10.2210/pdb5f4j/pdb
PDB entry 5f4j coloured by chain, front view.
PDB entry 5f4j coloured by chain, side view.
PDB entry 5f4j coloured by chain, top view.
Source organism: Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87
Primary publication:
Structural Evolution of the Emerging 2014-2015 GII.17 Noroviruses.
Singh BK, Koromyslova A, Hefele L, Gürth C, Hansman GS
J Virol 90 2710-5 (2015)
PMID: 26699640

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-100483 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VP1 Chain: A
Molecule details ›
Chain: A
Length: 306 amino acids
Theoretical weight: 33.62 KDa
Source organism: Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A076JB57 (Residues: 225-530; Coverage: 57%)
Gene name: VP1
Sequence domains: Calicivirus coat protein C-terminal
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand EDO 2 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-2
Spacegroup: C2221
Unit cell:
a: 73.3Å b: 100.75Å c: 83.37Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.168 0.166 0.198
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

4 review citations

Burden of acute gastroenteritis caused by norovirus in China: A systematic review.
Zhou et al. (2017)
3 more

2 mentions without citation

Structural Evolution of the Emerging 2014-2015 GII.17 Noroviruses.
Singh et al. (2015)
1 more