› 5gvo

Solution NMR

Solution NMR structure of a new lasso peptide sphaericin

Released:
DOI: 10.2210/pdb5gvo/pdb
PDB entry 5gvo coloured by chain, ensemble of 15 models, front view.
PDB entry 5gvo coloured by chain, ensemble of 15 models, side view.
PDB entry 5gvo coloured by chain, ensemble of 15 models, top view.
Source organism: Planomonospora sphaerica
Primary publication:
Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica
Kodani S, Inoue Y, Suzuki M, Dohra H, Suzuki T, Hemmi H, Ohnishi-Kameyama M
Eur. J. Org. Chem. 1177-1183 (2017)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103095 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative lasso peptide Chain: A
Molecule details ›
Chain: A
Length: 18 amino acids
Theoretical weight: 2.18 KDa
Source organism: Planomonospora sphaerica
UniProt:
  • Canonical: A0A171DJY5 (Residues: 22-39; Coverage: 46%)
Gene names: PS9374_04799, sphA

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 80%
Refinement method: simulated annealing

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