› 5gzg

X-ray diffraction
2Å resolution

Galectin-8 N-terminal domain carbohydrate recognition domain

Released:
DOI: 10.2210/pdb5gzg/pdb
PDB entry 5gzg coloured by chain, front view.
PDB entry 5gzg coloured by chain, side view.
PDB entry 5gzg coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystallization of Galectin-8 Linker Reveals Intricate Relationship between the N-terminal Tail and the Linker.
Si Y, Wang Y, Gao J, Song C, Feng S, Zhou Y, Tai G, Su J
Int J Mol Sci 17 (2016)
PMID: 27973456

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126160 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Galectin-8 Chain: A
Molecule details ›
Chain: A
Length: 189 amino acids
Theoretical weight: 21.21 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O00214 (Residues: 1-186; Coverage: 59%)
Gene name: LGALS8
Sequence domains: Galactoside-binding lectin
Structure domains: Jelly Rolls

Ligands and Environments

Carbohydrate polymer : NEW Components: BGC, GAL
Carbohydrate polymer
2 bound ligands:
Ligand NA 1 x NA
Ligand NI 1 x NI
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL18U1
Spacegroup: P43212
Unit cell:
a: 49.127Å b: 49.127Å c: 159.666Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.208 0.203 0.258
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Galectin Targeted Therapy in Oncology: Current Knowledge and Perspectives.
Wdowiak et al. (2018)
1 more

1 mention without citation

Crystallization of Galectin-8 Linker Reveals Intricate Relationship between the N-terminal Tail and the Linker.
Si et al. (2016)