› 5lf8

X-ray diffraction
2.56Å resolution

Human Nucleoside diphosphate-linked moiety X motif 17 (NUDT17)

Released:
DOI: 10.2210/pdb5lf8/pdb
PDB entry 5lf8 coloured by chain, front view.
PDB entry 5lf8 coloured by chain, side view.
PDB entry 5lf8 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Mathea S, Tallant C, Salah E, Wang D, Velupillai S, Nowak R, Oerum S, Krojer T, Burgess-Brown N, von Delft F, Arrowsmith CH, Edwards AM, Bountra C, Huber K, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-142852 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside diphosphate-linked moiety X motif 17 Chain: A
Molecule details ›
Chain: A
Length: 328 amino acids
Theoretical weight: 35.96 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P0C025 (Residues: 1-328; Coverage: 100%)
Gene name: NUDT17
Sequence domains: NUDIX domain

Ligands and Environments

2 bound ligands:
Ligand PO4 1 x PO4
Ligand EMC 2 x EMC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: R32
Unit cell:
a: 151.913Å b: 151.913Å c: 81.495Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.231 0.227 0.298
Expression system: Spodoptera frugiperda

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